高级检索+

基于叶绿体rps16基因和核基因ITS片段研究肉苁蓉属系统位置

李汐, 祝铭, 孙延霞, 钟扬, 李建强

李汐, 祝铭, 孙延霞, 钟扬, 李建强. 基于叶绿体rps16基因和核基因ITS片段研究肉苁蓉属系统位置[J]. 植物科学学报, 2012, 30(5): 431-436. DOI: 10.3724/SP.J.1142.2012.50431
引用本文: 李汐, 祝铭, 孙延霞, 钟扬, 李建强. 基于叶绿体rps16基因和核基因ITS片段研究肉苁蓉属系统位置[J]. 植物科学学报, 2012, 30(5): 431-436. DOI: 10.3724/SP.J.1142.2012.50431
LI Xi, ZHU Ming, SUN Yan-Xia, ZHONG Yang, LI Jian-Qiang. Systematic Position of Cistanche (Orobanchaceae) Based on cpDNA rps16 and ncDNA ITS Sequences[J]. Plant Science Journal, 2012, 30(5): 431-436. DOI: 10.3724/SP.J.1142.2012.50431
Citation: LI Xi, ZHU Ming, SUN Yan-Xia, ZHONG Yang, LI Jian-Qiang. Systematic Position of Cistanche (Orobanchaceae) Based on cpDNA rps16 and ncDNA ITS Sequences[J]. Plant Science Journal, 2012, 30(5): 431-436. DOI: 10.3724/SP.J.1142.2012.50431
李汐, 祝铭, 孙延霞, 钟扬, 李建强. 基于叶绿体rps16基因和核基因ITS片段研究肉苁蓉属系统位置[J]. 植物科学学报, 2012, 30(5): 431-436. CSTR: 32231.14.SP.J.1142.2012.50431
引用本文: 李汐, 祝铭, 孙延霞, 钟扬, 李建强. 基于叶绿体rps16基因和核基因ITS片段研究肉苁蓉属系统位置[J]. 植物科学学报, 2012, 30(5): 431-436. CSTR: 32231.14.SP.J.1142.2012.50431
LI Xi, ZHU Ming, SUN Yan-Xia, ZHONG Yang, LI Jian-Qiang. Systematic Position of Cistanche (Orobanchaceae) Based on cpDNA rps16 and ncDNA ITS Sequences[J]. Plant Science Journal, 2012, 30(5): 431-436. CSTR: 32231.14.SP.J.1142.2012.50431
Citation: LI Xi, ZHU Ming, SUN Yan-Xia, ZHONG Yang, LI Jian-Qiang. Systematic Position of Cistanche (Orobanchaceae) Based on cpDNA rps16 and ncDNA ITS Sequences[J]. Plant Science Journal, 2012, 30(5): 431-436. CSTR: 32231.14.SP.J.1142.2012.50431

基于叶绿体rps16基因和核基因ITS片段研究肉苁蓉属系统位置

基金项目: 国家自然科学基金资助项目(31070197)。
详细信息
    通讯作者:

    钟 扬, E-mail: yangzhongfudan@hotmail.com

    李建强, E-mail: lijq@wbgcas.cn

  • 中图分类号: Q949.778.3

Systematic Position of Cistanche (Orobanchaceae) Based on cpDNA rps16 and ncDNA ITS Sequences

  • 摘要: 在前人对列当科系统发育研究的基础上,追加了肉苁蓉属(Cistanche)的基因序列数据,运用最大简约法、最大似然法和贝叶斯推断方法探讨了其在列当科中的系统位置及列当科中属间关系。基于rps16基因序列及rps16+ITS联合序列建立了列当科系统发育树,结果显示,肉苁蓉属、列当属(Orobanche)以及草苁蓉属(Boschniakia)聚在同一进化枝内,肉苁蓉属和列当属表现出最近亲缘关系;列当科中的全寄生类群、半寄生类群和非寄生类群分属在3个不同分支中。
    Abstract: Based on previous study of Orobanchaceae,we added sequence data of the genus Cistanche,used maximum parsimony,maximum likelihood and Bayesian inference to perform phylogenetic analysis,and investigated the systematic position of Cistanche in Orobanchaceae, as well as the generic relationships within Orobanchaceae. The phylogenetic trees respectively basing on sequences of rps16 and rps16+ITS revealed that Cistanche,Orobanche,and Boschniakia formed a one single clade,Cistanche was a sister to Orobanche,and holoparasi-tic,semiparasitic and non-parasitic taxon in Orobanchaceae fell into three separate clades.
  • [1] Young N D,Steiner K E,dePamphilis C W.The evolution of parasitism in Scrophulariaceae/Orobanchaceae: plastid gene sequences refute an evolutionary transition series[J].Ann Mo Bot Gard,1999, 86: 876-893.
    [2] Nickrent D L.The parasitic plant connection: parasitic plant genera.2010,Department of Plant Biology,Southern Illinois University,Carbondale,Illinois,USA.http://www.parasiticplants.siu.edu/ListParasites.htm.
    [3] Oxelman B,Lidén M,Berglund D.Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae)[J].Plant Syst Evol, 1997, 206: 393-410.
    [4] Andersson L,Rova J H E.The rps16 intron and the phylogeny of the Rubioideae (Rubiaceae)[J].Plant Syst Evol, 1999, 214: 161-186.
    [5] Asmussen C B,Chase M W.Coding and noncoding plastid DNA in palm systematics[J].Am J Bot, 2001, 88: 1103-1117.
    [6] Lee J,Hymowitz T.A molecular phylogenetic study of the subtribe Glycininae (Leguminosae) derived from the chloroplast DNA rps16 intron sequences[J].Am J Bot, 2001, 88: 2064-2073.
    [7] Downie S R,Katz-Downie D S.Phylogenetic ana-lysis of chloroplast rps16 intron sequences reveals relationships within the woody southern African Apiaceae subfamily Apioideae[J].Can J Bot,1999, 77: 1120-1135.
    [8] Manen J F,Habashi C,Jeanmonod D,Park J M,Schneeweiss G M.Phylogeny and intraspecific variability of holoparasitic Orobanche (Orobanchaceae) inferred from plastid rbcL sequences[J].Mol Phylogenet Evol, 2004, 33: 482-500.
    [9] Schneeweiss G M,Colwell A,Park J M,Jang C G,Stuessy T F.Phylogeny of holoparasitic Orobanche (Orobanchaceae) inferred from nuclear ITS sequences[J].Mol Phylogenet Evol, 2004, 30: 465-478.
    [10] Carlón L,Gómez Casares G,Laínz M,Moreno Moral G,Sánchez Pedrajaó,Schneeweiss G M.Más,a propósito de algunas Orobanche L. y Phelipanche Pomel (Orobanchaceae) del oeste del Palear'tico[J].Doc Jardín Bot Atlánt Gijón, 2005, 3: 1-71
    [11] Bennett J, Mathews S.Phylogeny of the parasitic plant family Orobanchaceae inferred from Phytochrome A[J].Am J Bot, 2006, 93(7): 1039-1051.
    [12] Park J M,Manen J F,Colwell A E,Schneeweiss G M.A plastid gene phylogeny of the non-photosynthetic parasitic Orobanche (Orobanchaceae) and related genera[J].J Plant Res, 2008, 121: 365-376.
    [13] 国家林业局保护司.中国珍稀濒危植物名录.2010.http://www.03964.com/read/0c5042f2734b28277fdb2f8d.html.
    [14] Shaw J,Lickey E B,Beck J T,Farmer S B,Liu W S,Miller J,Siripun K C,Winder C T,Schilling E E,Small R L.The tortoise and the hare. Ⅱ.Relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis[J].Am J Bot, 2005, 92: 142-166.
    [15] Ronquist F,Huelsenbeck J P.MrBayes 3: Baye-sian phylogenetic inference under mixed models[J].Bioinformatics, 2003, 19: 1572-1574.
    [16] dePamphilis C W,Palmer J D.Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant[J].Nature,1990, 348: 337-339.
计量
  • 文章访问数:  2882
  • HTML全文浏览量:  1
  • PDF下载量:  1845
  • 被引次数: 0
出版历程
  • 收稿日期:  2012-04-26
  • 修回日期:  2012-05-17
  • 发布日期:  2012-10-29

目录

    /

    返回文章
    返回