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朱红大杜鹃MADS-box基因家族的全基因组鉴定与特征分析

Genome-wide identification and characterization of MADS-box gene family of Rhododendron griersonianum Balf. f. et Forrest

  • 摘要: MADS-box是在植物生长发育过程中扮演重要角色的一类转录因子,特别是花器官形成、开花时间控制及果实发育与成熟等过程。本研究基于朱红大杜鹃(Rhododendron griersonianum Balf. f. et Forrest)全基因组测序数据,利用生物信息学方法从中鉴定出 81 个 MADS-box 基因,并进行了分析。根据系统发育关系和蛋白结构将 MADS-box分为两类:Type-Ⅰ型包含 24 个基因,Type-Ⅱ型包含57个基因,这些基因不均匀地分布于12条染色体上;81个MADS-box 基因中,存在 6 对片段复制和 1 对串联复制基因,且它们经历了纯化选择作用;同时,基因启动子区域含有光响应、植物生长、激素反应和胁迫响应等顺式作用元件。综上,本研究鉴定了朱红大杜鹃的MADS-box家族转录因子,为深入研究其 MADS-box 蛋白的生物学功能提供了基础。

     

    Abstract: MADS-box genes play an important role in plant growth and development, especially in processes such as floral organ formation, flowering time regulation, and fruit development and ripening. Based on whole-genome sequencing data of Rhododendron griersonianum Balf. f. et Forrest, 81 MADS-box genes were identified and analyzed using bioinformatics methods. Phylogenetic analysis and protein structure classification divided these genes into two classes, including 24 genes in Type-Ⅰand 57 genes in Type-Ⅱ. The MADS-box genes were unevenly distributed across 12 chromosomes, with no genes located on chromosome 2. Among the 81 MADS-box genes, six pairs showed segmental duplications and one pair showed tandem duplication, all of which have undergone purifying selection. The promoter regions of the MADS-box genes contained elements involved in light response, plant growth, hormone response, and stress response. Overall, the identification of MADS-box gene family members provides a reliable reference for further studies on the biological functions of MADS-box proteins in R. griersonianum

     

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